seqcluster in pypi

After many days of hard work :) we finally have seqcluster (https://github.com/lpantano/seqcluster) at pypi (https://pypi.python.org/pypi/seqcluster/0.99.1). Easy installation in python.

Also we are trying to get a good documentation here: http://seqcluster.readthedocs.org

Finally, We are working to publish this work with a very good data set soon. Keep in touch!

We move to GitHub

We finally moved to GitHub, since it has been proven to give more usability for users and developers.

https://github.com/lpantano/seqbuster

Merry christmas

seqbuster cited in gEuvadis paper

We are proud to communicate that the gEuvadis consortium used miraligner to characterize the small RNA data: http://www.nature.com/nbt/journal/v31/n11/full/nbt.2702.html

thank you

New dev version for adrec (set up of minimum and maximum sequence size allowed)

There is a new version in the dev folder of the code.
This version accept two more parameters (readme):

1. select the minimum size of sequences to be reported
2. select the maximum size of sequences to be reported

any problem, please open an issue in google code.

Thanks to Eduard Casas for the comment.

update to miRBase 20-June 2013

miraligner has been updated with miRBase v20.

just type the following inside the main folder :

 svn update

update to miRBase v19

SeqBuster and miraligner have been updated with miRBase v19. To upgrade to that version you need to get the tool from google code.
To install and update SeqBuster visit the following page: http://code.google.com/p/seqbuster/wiki/Installation

To move from sourceforge installation to google code:

1. keep the files you have in seqbuster folder: installed, seqbuster.op
2. get seqbuster again following the instruction of the above link at a new location
3. save the previous two files inside interface folder
4. Run SeqBuster as usual: http://code.google.com/p/seqbuster/wiki/seqbusterviz

SeqBuster moves to google code

SeqBuster and all the command-line tools are now located at google code:

http://code.google.com/p/seqbuster/

The code in sourceforge will remain there but it won't be updated any more.

SeqBuster Team